PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476631
Common NameARALYDRAFT_476631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 193aa    MW: 21469.8 Da    PI: 4.339
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476631genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-191969155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
            s+ykGVr +k +g+Wv+eIr p     +   r++lg+++t+e+Aa+a +aa  +l+g
  476631 19 SKYKGVRKRK-WGKWVSEIRLP-----HsrERIWLGSYDTPEKAARAFDAAQFCLRG 69
            89*****999.**********7.....335*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-121969IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-211978IPR016177DNA-binding domain
CDDcd000186.06E-291979No hitNo description
SMARTSM003806.5E-312083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-292078IPR001471AP2/ERF domain
PROSITE profilePS5103222.0892077IPR001471AP2/ERF domain
PRINTSPR003671.1E-92132IPR001471AP2/ERF domain
PRINTSPR003671.1E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVKQAIKEEE KTRNTAMQSK YKGVRKRKWG KWVSEIRLPH SRERIWLGSY DTPEKAARAF  60
DAAQFCLRGG DANFNFPDNP PSISGGRSLT PPEIQEAAAR FANITQDSVV VVKGEGEEES  120
GLVPGSETRP ESPSTSASVA TSTVDYDLSF YDLLPMDFGF DDFSDDRFTE ILPIEDYGGE  180
SLLDESLLLW DF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132581e-175AC013258.5 Arabidopsis thaliana chromosome 1 BAC F9E10 genomic sequence, complete sequence.
GenBankAY1283091e-175AY128309.1 Arabidopsis thaliana AP2 domain containing protein, putative (At1g74930) mRNA, complete cds.
GenBankBT0033481e-175BT003348.1 Arabidopsis thaliana AP2 domain containing protein, putative (At1g74930) mRNA, complete cds.
GenBankCP0026841e-175CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF25A41e-175AC008263.2 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887566.11e-140hypothetical protein ARALYDRAFT_476631
SwissprotQ9S7L51e-120ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLD7KSI91e-140D7KSI9_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.2__1761__AT1G74930.11e-140(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.16e-85ERF family protein